Populations of demersal rockfish of the genus Sebastes are challenging to assess because they inhabit rocky areas that are difficult to sample with trawl gear. In contrast, longline gear can sample rocky areas, but several factors besides fish density can affect the relationship between catch rates and density. In this study, longline catch rates of shortraker rockfish Sebastes borealis and rougheye rockfish S. aleutianus were compared with observations of density from a manned submersible to evaluate the species' catchability on longline gear. On separate occasions, rockfish behavior in the presence of longline gear was observed from the submersible. Densities averaged 3.0 shortraker and rougheye rockfish (combined) per 330 m² of bottom (the effectively sampled area of a 100-m transect). Longline catch rates averaged 2.7 shortraker and rougheye rockfish per skate of 45 hooks. Longline catch rates were not statistically affected by submersible observations. There was a positive trend between density and longline catch rates, but the relationship was not significant. As observed from the submersible, the proportion of fish free-swimming near the longline increased through the duration of the set, indicating that rockfish were attracted to the line faster than they were caught. The catching process for shortraker and rougheye rockfish lasts longer than for more mobile species such as sablefish Anoplopoma fimbria.

We investigated the spatial distribution of Atka mackerel Pleurogrammus monopterygius with respect to maturity stage at Seguam Pass in the Aleutian Islands as well as their spawning locations within trawlable areas at three small-scale (10–20-nautical mile or 18.5–37.0-km) sites. Histological methods were used to determine maturity stages, and male maturity stages are described for the first time. Spawning areas were identified by catch per unit effort of demersal egg masses. At Seguam Pass, spawning was concentrated in the area adjacent to the east side of Amlia Island and between Amlia and Seguam islands. The observed spatial segregation of Atka mackerel by sex and maturity stage appears to interact with the boundaries of the trawl exclusion zone (TEZ) at Seguam Pass. During spawning, mature fish aggregate inside the closed area and immature fish and nonreproductively active mature males aggregate outside the TEZ in the area open to fishing. This increased the commercial catch selectivity of nonreproductively active males and immature fish during the September fishery. The spawning areas observed at Seguam and Tanaga passes and near Amchitka Island were within TEZs, which may serve as de facto marine protected areas for spawning Atka mackerel.

The distribution patterns of Atka mackerel Pleurogrammus monopterygius were examined, both seasonally and spatially, to identify essential feeding habitat and to add to existing knowledge of diet composition. The study focused on two local aggregations in the Aleutian Islands, Alaska: one at Seguam Pass and one near Amchitka Island. At each locale, we examined the mean stomach fullness (i.e., feeding intensity) and diet composition of randomly selected fish within and outside of trawl exclusion zones (TEZs). The trawl exclusion zones extend out 10–20 nm from Steiler sea lion Eumetopias jubatus rookeries and haulouts; no trawling is allowed inside these zones. During four of the six periods examined, mean stomach fullness was higher inside the TEZ than outside it. At Seguam Pass, fish were distributed into northern and southern aggregations and diet composition varied by age, season, and location relative to the TEZs. Feeding intensity appeared to be greatest inside the TEZ in the northern portion of Seguam Pass near a productive frontal region characterized by a transition zone of well-mixed (upwelling) and stratified water. At Seguam Pass, piscivory occurred almost entirely inside the TEZ in June. Near Amchitka Island, feeding intensity was significantly higher inside the TEZ, which coincided with an increase in egg cannibalism in October. Based on these observations, we suggest that the areas of increased feeding activity in conjunction with diet composition at Seguam Pass and Amchitka Island represent essential feeding habitat for Atka mackerel.

Although incorporating detailed reproductive data into all stock assessments is not a practical goal, the need to understand how reproductive biology affects population productivity is being increasingly recognized. More research focused on reproductive biology—coupled with a shift towards a resilience perspective in fisheries science—is resulting in challenges to many long-held assumptions; the emergence of important new issues; and identification of the need to improve data and methods used in reproductive studies. Typically, data for reproductive studies are based on an assessment of gonadal development, which is most accurately evaluated with histology. This special section of Marine and Coastal Fisheries contains contributions from a workshop on the gonadal histology of fishes that was held in Cadiz, Spain, during June 2009. These papers cover a wide range of species and reproductive topics while introducing improved and new histological techniques. In this introduction, we address the following needs: (1) to employ standardization, thereby improving our ability to conduct comparative studies; (2) to better understand patterns of gonadal development and spawning events over time; and (3) to move beyond the spawning stock biomass paradigm. We identify the contributions of special section papers to these topics and conclude by suggesting needs for future research and integration of reproductive data into both conceptual and quantitative models to better understand how reproductive performance affects population dynamics.

As the number of fish reproduction studies has proliferated, so has the number of gonadal classification schemes and terms. This has made it difficult for both scientists and resource managers to communicate and for comparisons to be made among studies. We propose the adoption of a simple, universal terminology for the phases in the reproductive cycle, which can be applied to all male and female elasmobranch and teleost fishes. These phases were chosen because they define key milestones in the reproductive cycle; the phases include immature, developing, spawning capable, regressing, and regenerating. Although the temporal sequence of events during gamete development in each phase may vary among species, each phase has specific histological and physiological markers and is conceptually universal. The immature phase can occur only once. The developing phase signals entry into the gonadotropin-dependent stage of oogenesis and spermatogenesis and ultimately results in gonadal growth. The spawning capable phase includes (1) those fish with gamete development that is sufficiently advanced to allow for spawning within the current reproductive cycle and (2) batch-spawning females that show signs of previous spawns (i.e., postovulatory follicle complex) and that are also capable of additional spawns during the current cycle. Within the spawning capable phase, an actively spawning subphase is defined that corresponds to hydration and ovulation in females and spermiation in males. The regressing phase indicates completion of the reproductive cycle and, for many fish, completion of the spawning season. Fish in the regenerating phase are sexually mature but reproductively inactive. Species-specific histological criteria or classes can be incorporated within each of the universal phases, allowing for more specific divisions (subphases) while preserving the overall reproductive terminology for comparative purposes. This terminology can easily be modified for fishes with alternate reproductive strategies, such as hermaphrodites (addition of a transition phase) and livebearers (addition of a gestation phase).

Reproductive timing can be defined as the temporal pattern of reproduction over a lifetime. Although reproductive timing is highly variable in marine fishes, certain traits are universal, including sexual maturity, undergoing one or more reproductive cycles, participating in one or more spawning events within a reproductive cycle, release of eggs or offspring, aging, and death. These traits commonly occur at four temporal scales: lifetime, annual, intraseasonal, and diel. It has long been known that reproductive timing affects reproductive success, especially in terms of the onset of sexual maturity and the match or mismatch between seasonal spawning and offspring survival. However, a comprehensive understanding of variability in reproductive timing over species, populations, and temporal scales is lacking. In addition, there is a need to assess how variability in reproductive timing affects a population's resilience. Because natural selection occurs at the individual level, this necessitates an understanding of within-population (i.e., individual) variability in reproductive timing and how fishing may impact it through age truncation and size-specific selectivity or fisheries-induced evolution. In this paper, we review the temporal aspects of reproductive strategies and the four most-studied reproductive timing characteristics in fishes: sexual maturity, spawning seasonality, spawning frequency, and diel periodicity. For each characteristic, we synthesize how it has traditionally been measured, advances in understanding the underlying physiology, its role in equilibriumbased fish population dynamics, and its importance to reproductive success. We then provide a review of emerging methodology—with an emphasis on ovarian histology—to improve our ability to assess variability in reproductive timing both among populations and within populations.

As for other teleosts, the level of primary oocyte production ultimately determines the number of eggs shed by Atlantic cod Gadus morhua, but so far these minute cells have been little studied, probably due to methodological challenges. We established a quantitative “grid method” based on simple oocyte packing density (OPD) theory, accurate input data on ovary volume, oocyte-stage-specific ovarian volume fractions (from hits on grid-overlaid sections), and individual oocyte volumes (from diameter measurements of transections). The histological OPD results were successfully validated by automated measurements in whole mounts. The analyzed material originated from cultured Atlantic cod held in tanks for 19 months through the first maturity cycle and part of the second maturity cycle. Prior to sexual maturity, none of the fish showed the so-called circumnuclear ring (CNR; rich in RNA and organelles) in the cytoplasm of their primary oocytes, but this ring (phases 4a, 4b, and 4c) quickly appeared later on around the time of the autumnal equinox, followed by production of cortical alveolar oocytes (CAOs), early vitellogenic oocytes (EVOs), and late vitellogenic oocytes (LVOs). A very similar pattern was observed in the second maturity cycle. Thus, it is concluded that an autumnal night longer than 12 h generally triggers oocyte growth in Atlantic cod. A few immature individuals became arrested at the early CNR phase (phase 4a); hence, the use of CNR presence as a maturity marker should be treated with some caution. The maximum OPD was 250,000 oocytes/g of ovary for phase 4a; 100,000 oocytes/g for combined phases 4b and 4c; 100,000 oocytes/g for CAOs; 50,000 oocytes/g for EVOs; and 25,000 oocytes/g for LVOs. The relative somatic fecundity showed a dome-shaped curve with oocyte development (from CAO to LVO). Production of CAOs appeared at a fresh oocyte diameter of 180 µm, which is significantly below the commonly accepted threshold value of 250 µm for developing Atlantic cod oocytes.

In a study of reproduction in male European eels Anguilla anguilla, we induced spermatogenesis through hormone injection and established a spermatogenic maturity index (SMI) as a novel quantification of testis development. Eels in the experiments were sacrificed weekly and testis tissue was sampled for histological analysis of spermatogenesis. Testis development was followed over 18 weeks, during which the males continued to develop spermatocytes and produce spermatozoa. The SMI describes testis development from estimation of the area fractions of various tissue categories characterized by progressive gamete development stages in histological sections of the testes. The index weighs the volume fractions of the different tissues (somatic cells and germ cell stages) and describes development on a scale of 0 to 1. The method improves the existing histological classification, providing a quantitative measure that reflects the spermatogenic process and can be correlated with morphological and physiological parameters. In this study, the SMI reacted immediately to the onset of spermatogenesis and increased linearly over time, tracking the development of spermatocysts and spermatozoa. In week 7, the SMI reached a stable level of around 0.75, where it remained, with limited fluctuations, until the end of the experiment. This reflected the composition of different germ cell stages in the testis tissue with a continuous generation of spermatocysts and production of spermatozoa. In comparison, the gonadosomatic index showed a delayed response to the onset of spermatogenesis and fluctuated substantially during the sperm production period. The properties of the SMI made it a useful index for describing spermatogenesis in male European eels during this experiment and a promising tool for quantifying testis development and describing male reproductive strategy in other fish species.

We present a method for estimating the interspawning interval (ISI) in batch-spawning teleosts with indeterminate fecundity based on the rate of oocyte growth and the size of oocytes at the beginning and end of the spawning cycle. The method is accompanied by a number of prerequisites, which are tested and subsequently applied to wild collections of Atlantic sardine Sardina pilchardus (also known as European pilchard). The rate of oocyte growth and oocyte size at the end of vitellogenesis were shown to exhibit rather constant values in Atlantic sardine; thus, the ISI could be simply estimated as a factor of oocyte size at the beginning of the spawning cycle (O_b). Given that vitellogenesis in Atlantic sardine ceases at final oocyte maturation, O_b was estimated by measuring the size of oocytes of the subsequent batch in females with hydrated oocytes. The resulting average ISI was very close to inverse values of the spawning fraction estimated through the postovulatory follicle method, which indicated the validity of the ISI method. Applications of the ISI method require fewer samples of adult females compared with the postovulatory follicle method, are histology independent, and could be combined with oocyte counts to provide batch fecundity measurements. These modifications in spawning frequency and batch fecundity estimation could help to decrease both cost and labor in daily egg production method surveys.

Samples of Atlantic sardine Sardina pilchardus (also known as European pilchard) were collected bimonthly from 2004 to 2008 off the central west coast of Portugal to describe the reproductive activity of this indeterminate batch-spawning species; compare the seasonality of somatic growth, condition, and feeding; and evaluate differences between sexes. Monthly assessments of individual biological information for both males and females were complemented by histological analysis of ovaries during 1 year and liver tissues (both sexes) at different times of the reproductive cycle. The temporal patterns of the gonadosomatic index and various histological indices (most advanced oocyte stage, atresia incidence and prevalence, and spawning activity) indicated that Atlantic sardine were reproductively active mainly from October to March and that residual activity occurred in the remaining months. For both sexes, condition indices (hepatosomatic index, relative weight, and amount of fat stored) increased mainly during spring, reached a maximum at the end of summer just before the subsequent spawning season began, and then decreased during autumn and winter, declining to minimum levels at the beginning of spring coincident with a significant reduction in reproductive activity. Somatic growth took place mainly during spring and early summer for both sexes. The observed seasonal patterns in these biological properties suggest a seasonal transition from a period in which energy resources are allocated to reproduction (autumn and winter) to a period in which resources are allocated to growth and fat deposition (spring and summer). The only exception was the distinct hepatosomatic index pattern and the histological differences in hepatocytes between males and females during the spawning season, which may be related to the dual function of the liver in females (lipid metabolism and yolk precursor synthesis).

The usefulness and importance of histological techniques in reproductive studies have been widely discussed for gonochoristic fish species. In the case of hermaphroditic fishes, histology is a particularly important tool for the proper identification of sexual pattern (i.e., sequential, simultaneous, or nonfunctional hermaphroditism). We used a histological approach to describe hermaphroditism, dynamics of follicle development, and spawning patterns in three species from the northwestern Mediterranean Sea (Balearic Islands, Spain): the Mediterranean rainbow wrasse Coris julis (sequential hermaphrodite), painted comber Serranus scriba (simultaneous hermaphrodite), and annular sea bream Diplodus annularis (nonfunctional hermaphrodite). Development of secondary growth follicles was asynchronous in all three species, and similar peaks in spawning activity occurred between May and July. However, notable differences in sexual cycle and egg production were found. For the painted comber, hydrated follicles were present in ovarian tissue almost every day during the peak of the spawning season, suggesting daily spawning and increasing the chances of autofertilization unless a mechanism to avoid this action is present in this species. Intersexual Mediterranean rainbow wrasses were identified, and the size and age at sex change were estimated to be 132 mm total length and 4 years, respectively. Previous investigators have concluded that the annular sea bream is a protandric hermaphrodite, but our results indicate nonfunctional hermaphroditism. These three species are of little commercial interest and are considered to be bycatch by the artisanal fleet, but they are vulnerable to the impacts of some recreational angling activities. Currently, no specific management plan has been developed for these species. We address the importance of describing sexual pattern and its implications for future conservation efforts.

There is a need for a unified terminology to describe reproductive phase assignment across fish taxa, regardless of the reproductive strategy involved. Reproductive terminology already adopted for teleosts has been applied to oviparous elasmobranchs of both sexes. A historical review of the terminologies used by previous authors and how these correspond to the new terminology is presented. Five reproductive phases are considered: immature, developing, spawning capable (which includes an actively spawning subphase), regressing, and regenerating. By using an oviparous elasmobranch, the thornback ray Raja clavata, as an example, the different phases are described based on both macroscopic and microscopic features of the reproductive tract, including the ovaries, oviducal glands, and uterus in females and the testes, claspers, and sperm ducts in males. The regressing phase was observed in females, but the regenerating phase was not; neither of these two phases was observed in males. Records from other species suggest that all five reproductive phases can be found in oviparous elasmobranchs, depending on the reproductive strategy of the species.

The traditional view of iteroparity in fishes is one of an annual reproductive cycle that culminates each year in spawning. More recently, a more flexible view of fish reproduction has been adopted, including the potential for mature fish to skip spawning. Here, we review the abundance of recent research on skipped spawning, covering a broad range of fishes with diverse life history strategies. Evidence for skipped spawning has been collected by use of traditional histological techniques as well as modern technological advances, such as satellite tags and the ability to track fish movements based on elemental and isotope signatures. Skipped spawning is most commonly attributed to deficient diet and poor nutritional condition. Advances made in this field of study in recent years include descriptions of hormonal changes that precede and perhaps initiate skipped spawning, the development of life history models that incorporate the potential for skipped spawning, and estimates of the degree to which skipped spawning influences the reproductive potential of fish populations. In addition to summarizing this new research, we attempt to advance current knowledge by (1) providing the first review discussion of skipped spawning in males, (2) exploring skipped spawning in anadromous fishes by using the Atlantic salmon Salmo salar as an example, and (3) discussing the potential for and difficulties in identifying skipped spawning in species with indeterminate fecundity.

Ecosystem-based fisheries management requires data on all parts of the ecosystem, and this can be a barrier in data-poor systems. Marine ecologists need a means of drawing together diverse information to reconstruct species abundance trends for a variety of purposes. This article uses a fuzzy logic approach to integrate information from multiple data sources and describe biomass trends for marine species groups in the northern Gulf of California, Mexico. Forty-two species groups were analyzed, comprising fish, invertebrates, birds, mammals, turtles, and algae. The most important new data series comes from recent interviews with fishers in the northern part of the gulf. Respondents were asked to classify the abundance of various targeted and untargeted marine species groups from 1950 to the present. The fuzzy logic method integrates their responses with catch-per-unit-effort series, intrinsic vulnerability to fishing determined from life history parameters, biomass predicted by a Schaefer harvest model, and other simple indices. The output of the fuzzy logic routine is a time series of abundance for each species group that can be compared with known trends. The results suggest a general decline in species abundance across fished and mulshed taxa, with a few exceptions. Information gathered from interviews indicated that older fishers tended to recognize a greater relative decrease in species abundance since 1970 than did younger fishers, providing another example of Pauly's (1995) shifting cognitive baselines.

The Northwest Atlantic stock of Atlantic mackerel Scomber scombrus is distributed from Cape Hatteras to Newfoundland and migrates great distances on a seasonal basis. Atlantic mackerel are sensitive to changes in temperature, preferring water greater than 5° C. Annual changes in the winter and early-spring distributions of Atlantic mackerel were investigated using satellite imagery, research trawl surveys, geographical information systems, and spatial and standard statistical analyses. During the past 40-plus years (1968–2008), the distribution of the stock has shifted about 250 km to the north and east. Also, a change has occurred in the depth distribution of the stock, from deeper off-shelf locations to shallower on-shelf ones. Areal and bathymetric changes in distribution are correlated with interannual temperature variability and gradual warming. These results have implications for U.S. commercial and recreational mackerel fisheries because, despite the current high abundance of the stock, the changes in distribution will probably make it more difficult to find and catch Atlantic mackerel in certain areas in the future.

To identify processes potentially contributing to the differential marine survival rates of Chinook salmon Oncorhynchus tshawytscha and coho salmon O. kisutch originating from Southeast Alaska, we compared the early marine ecology of the two species during the critical first summer in marine waters. We predicted that the higher survival rates for coho salmon relative to Chinook salmon were related to the larger size, faster growth, or different habitat or species associations of coho salmon. Our size and growth expectations were largely substantiated: juvenile coho salmon were larger than juvenile Chinook salmon and had faster length-based growth, although weight-based growth rates were similar. The most obvious difference was in their distributions. Juvenile coho salmon overlapped spatially and temporally with abundant juvenile pink salmon O. gorbuscha and chum salmon O. keta, whereas juvenile Chinook salmon were geographically separated from other salmonids. This suggests that coho salmon benefited from a predation buffer that did not extend to Chinook salmon. Our results indicate that factors influencing marine survival of juvenile Chinook salmon and coho salmon in Southeast Alaska are attributable to species-specific differences in their early marine distribution patterns and species interactions.

The effectiveness of spatial management strategies is typically evaluated through traditional biological measurements of size, density, biomass, and the diversity of species inside and outside management boundaries. However, there have been relatively few attempts to evaluate the processes underlying these biological patterns. In this study, we take the first step toward developing a relative index of body growth for lingcod Ophiodon elongatus using plasma insulin-like growth factor 1 (IGF1) with the ultimate goal of measuring spatial differences in relative growth rates. Insulin-like growth factor 1 is one of the principal hormones that stimulates growth at the cellular level in all vertebrates and shows significant relationships with body growth in many fishes. In the laboratory, we found that the level of IGF1 was related to the instantaneous growth of juvenile lingcod. In the field, we measured size, condition, and plasma IGF1 level in 149 lingcod from eight locations inside and outside marine protected areas in the San Juan Islands, Washington. The IGF1 levels in wild lingcod were highly variable from site to site for both genders, and we were able to detect differences in IGF1 across space in males. Multivariate analyses showed that the spatial patterns of IGF1 differed from those of traditional biological measurements. More work is needed to validate the relationship between IGF1 and growth in larger individuals, but our research shows the potential for IGF1 to be used as an ecological indicator.

The abundance of anadromous salmon is partially determined by size-selective mortality during the early marine life phase. Consequently, identifying the growth patterns of juvenile salmon during this life phase is important in understanding the dynamics of salmon populations. We examined patterns of early marine growth in juvenile pink salmon Oncorhynchus gorbuscha released by four hatcheries in Prince William Sound (PWS), Alaska, and explored how these patterns related to marine survival. Since larger individuals are thought to experience reduced mortality, we partitioned the data into weight-based quartiles and compared growth rates (% body weight/d) of all fish, the largest fish (top 25%), and the smallest fish (bottom 25%). Sampling occurred during summer 1997–2004 in PWS, the inshore Gulf of Alaska (GOA), and the offshore GOA. Growth rates varied significantly among years and sampling locations; however, the growth rate patterns were markedly similar among size-groups and hatcheries. Growth rates tended to be high in 1997, 2002, and 2004 and lower in 1998, 2001, and 2003. Fish sampled in the offshore GOA typically had faster growth rates than those sampled elsewhere, although this was less pronounced for the largest fish. For all size-groups, the relationship between survival and growth rate was strongest for fish captured in the offshore GOA and weakest for those captured in PWS, indicating that the likelihood of survival is greater for juveniles that migrate offshore earlier. The strength of the growth rate—survival relationship for pink salmon captured in the offshore GOA was similar among all size-groups, suggesting that once fish migrate offshore they are less vulnerable to size-selective predation.

In the present study, the growth of juvenile tautogs Tautoga onitis in Narragansett Bay (Gaspee Point, Mount Hope Bay, and Rose Island) and Rhode Island coastal ponds (Point Judith and Charleston ponds) was evaluated by means of otolith microstructure. The widths of the daily increments in otoliths in the region that represents the postsettlement period (20–50 d) of tautogs collected in two separate years were compared among these stations. Significant differences were found in the growth trajectories within stations between years as well as among stations in each year. This study demonstrates that there can be significant variability in short-term growth for juvenile tautogs within and among estuaries. This variability may change from year to year, potentially affecting the interpretation of growth. A better understanding of the conditions affecting single factors of tautog production, such as growth over several years, may enable researchers to successfully characterize fish nursery value.

Norwegian coastal cod form a stationary population of Atlantic cod Gadus morhua consisting of several genetically separated subpopulations. A small-scale differentiation in marine populations with pelagic eggs and larvae is made possible by local retention of early life stages in coastal environments. A numerical model was used to simulate the circulation in a fjord system in northern Norway over 2 years with different river runoff patterns. The dispersal of cod eggs was calculated with a particle-tracking model that used three-dimensional currents. The observed thickness of the low-salinity surface layer was well reproduced by the model, but the surface salinity was generally lower in the model than in the observations. The cod eggs attained a subsurface vertical distribution, avoiding the surface and causing retention. Interannual variations in river runoff can cause small changes in the vertical distribution of cod eggs and larger changes in the vertical current structure. Retention in the fjord system was strong in both years, but some eggs were subjected to offshore transport over a limited time period. The timing of offshore transport depended on the precipitation and temperatures in adjacent drainage areas. A possible match between maximized spawning and offshore transport may have a negative effect on local recruitment.

We implanted individually coded acoustic transmitters into 40 adult winter flounder Pseudopleuronectes americanus (mean total length = 320 mm; range = 240–423 mm) and monitored them by use of passive acoustic telemetry from September 2007 to April 2009 to classify spatial and temporal movement patterns and quantify residency in Shinnecock Bay, eastern Long Island, New York. Overall, 94,250 valid detections were received. Winter flounder remained inshore, and 89% of the total detections occurred between May and October when bottom water temperature exceeded 15°C. Residency in Shinnecock Bay was dependent on time of release and varied greatly from a few weeks to more than 6 months; total presence (number of days on which individual fish were detected within the bay) averaged 22.0 d (range = 1–132 d). Tracked winter flounder were classified as exhibiting three movement patterns: (1) inner bay movements (short term versus long term), (2) dispersal to offshore waters, and (3) connectivity to other inshore areas. The first two patterns were consistent with historical notions of spatially overlapping resident and migratory individuals, whereas fish that displayed the third pattern may have exhibited a larger home range. These results provide insight into winter flounder movements, residency, and stock structure in a coastal bay of Long Island and provide important information for management. The interaction of exploitation and divergent migration behaviors may be a factor contributing to the winter flounder's decline in Long Island bays; however, more work will be required to obtain a full understanding of the spatial behavior and stock structure of this species.

The highly migratory nature of bluefish Pomatomus saltatrix makes comprehensive study of their populations and their potential responses to factors such as competition, habitat degradation, and climate change difficult. Body composition is an important ecological reference point for fish; however, estimating body composition in fish has been limited by analytical and logistical costs. We applied bioelectrical impedance analysis (BIA) to estimate one body composition component (percent dry weight) as a proxy of condition in bluefish. We used a tetra polar Quantum II BIA analyzer and measured electrical properties in the muscles of bluefish at two locations per fish (dorsal and ventral). In total, 96 bluefish ranging from 193 to 875 mm total length were used in model development and testing. On 59 of these fish BIA measures were taken at both 15° C and 27° C. Temperature had a significant negative effect on resistance and reactance. A subsample of these fish was then analyzed for dry weight as a percentage of their whole body weight (PDW), which is a good indicator of condition because it is highly correlated with fat content in fish. The BIA models predicting PDW inclusive of all lengths of bluefish were highly predictive for 15° C (stepwise regression) and 27°C. Regression (R²_pred) values that estimate future predictive power suggest that both models were robust. Strong relationships between PDW and other body composition components, coupled with the BIA models presented here, provide the tools needed to quantitatively assess bluefish body composition across spatial and temporal scales for which assessment was previously impossible.

We describe a new electric winch design and its functionality for conducting research operations off different-sized vessels. Currently, several small oceanographic winches are available for deploying research instruments and nets, but they are typically heavy, noisy, semipermanently mounted to the deck, hydraulically operated, and not readily transferable between vessels. The limitation of winch portability between vessels, in particular, has been exacerbated by the increasing use of a variety of chartered vessels to conduct state and federal agency and university research. To address these challenges, we developed a relatively lightweight (70 kg), portable block-design winch that is spooled with 400 m of plasma line, powered by two 12-V marine batteries, and operated by a remote control box on a pendant equipped with a joystick. The 2.2-kW drive produces 100 kg of line pull at speeds of 0 to 2.0 m/s. The pendant includes digital displays for line speed, scope, and angle as well as an emergency stop. Nicknamed the “Sidewinder,” this winch is quiet, can be operated by one person, and is suspended outboard from a davit or crane boom, increasing available deck space and relocating all lines safely away from vessel personnel. On vessels 7 to 50 m in length the Sidewinder has been successfully tested for deploying small gear such as conductivity—temperature—depth profilers and large BONGO plankton nets that require specific deployment and retrieval speeds and line angles. To ensure safe operation, vessel support features such as the power system and davit working load capacity should be considered when the Sidewinder is custom-built.

Trade-offs in energy allocation between growth and reproduction can result in variations in reproductive potential in fish with differing growth patterns. Spawning biomass is often used as a proxy for reproductive potential on the assumption that fecundity is directly proportional to body weight. We examined variations in the reproductive potential of Atka mackerel Pleurogrammus monopterygius by studying the effect of differential growth and condition patterns on fecundity, atresia, and egg energy. Fecundity and egg energy were determined for fish from two geographic areas, Seguam Pass and Amchitka Island, Alaska, and compared with those of fish held in captivity. These Atka mackerel showed distinct differences in growth and condition, with weight at length and length at age being the highest among captive fish, intermediate among fish from Seguam Pass, and lowest among fish from Amchitka Island. Realized fecundity showed that on average captive fish spawned seven batches, fish from Seguam Pass six batches, and fish from Amchitka Island five batches. For wild fish, potential and realized fecundity at length or age was significantly higher at Seguam Pass than at Amchitka Island, whereas the fecundity-at-weight relationship did not differ by area, suggesting that weight is a better predictor of fecundity than length or age. Atresia and batch fecundity by length or weight did not differ by area, suggesting that the variation in fecundity is better explained by the variation in batch number than by batch size. Oocyte dry weight was higher for captive fish than for wild fish, whereas batch order did not significantly affect oocyte dry weight. Increased potential fecundity, realized fecundity, and oocyte quality in Atka mackerel females were strongly related to body size, indicating that growth differences and maternal feeding success impact the fecundity and oocyte quality of Atka mackerel. Therefore, changes in growth and condition patterns need to be taken into account to accurately estimate the reproductive potential of this species.

Recent developments in the models used in wildlife and fisheries science have allowed the inclusion of a wider range of data than previously. However, the diagnostics of such complex models have not kept pace. We describe a new diagnostic technique based on simulation analysis. Model misspecification was identified through simulation methods that created a distribution of likely parameter values for a model that was correctly specified. If the actual estimate of that parameter is outside the bounds of the simulated distribution, then the model is probably misspecified. We tested the reliability of the new diagnostic by introducing known-model misspecification into complex fisheries stock assessment models. We then compared the results from this new diagnostic with those of a more tradition fisheries diagnostic, namely, retrospective analysis. The simulation-based diagnostic was shown to identify inisspecification affecting the estimated dynamics more reliably than retrospective analysis.

The Gulf menhaden Brevoortia patronus is one of the most abundant pelagic fishes in the northern coastal Gulf of Mexico (hereafter, “Gulf”) and is the principal forage for various commercial and sport fishes, sea birds, and marine mammals. Part of the life history of Gulf menhaden is spent on the continental shelf and part is spent within estuaries. Adults spawn near the mouth of the Mississippi River, and larvae aggregate within the river plume front. Larval Gulf menhaden transit the continental shelf and enter estuaries of the northern Gulf as juveniles. Govoni (1997) demonstrated an association between the discharge of the Mississippi and Atchafalaya rivers and Gulf menhaden recruitment. In particular, he found an inverse association between Mississippi River discharge and estimated recruitment of half-year-old fish based on recruitment data from Vaughan et al. (1996). Vaughan et al. (2000) updated this relationship with a regression analysis. Here, we revisit the relationship with additional years of data through 2004. The inverse relationship continues to hold. In addition, we reframed this relationship to produce a 1-year-ahead prediction model for forecasting recruitment to age 1 from Mississippi River discharge; this model can be used in proactive fishery management. Finally, we revisited the stock assessment model of Vaughan et al. (2007) and demonstrated an improvement in model performance when information on annual river discharge was incorporated.

Pop-up satellite archival tags (PSATs) were deployed on 19 sailfish Istiophorus platypterus captured in the southern Gulf of Mexico and Florida Straits between 2005 and 2007 on commercial pelagic longline gear (n = 18) and recreational rod-and-reel gear (n = 1). The data from three tags indicated mortality events and were excluded from subsequent analyses. All PSATs were programmed to collect pressure (depth), temperature, and light-level data for 10 d at approximately 90-s intervals. These transmitted point data subsequently allowed the reconstruction of vertical movement patterns. The remaining 16 PSAT data sets indicate that sailfish are primarily associated with the upper surface waters within the top 20 m (75.7% of total time during the day versus 46.7 % at night) but undertake numerous short-duration vertical movements below the local mixed layer to depths of 50–150 m, presumably to feed. Analyses of 2,279 individual vertical movements among all 16 tagged sailfish indicated two distinct types (short-duration “V” and longer-duration “U” movements) similar to those reported for white marlin Kajikia albida. Sailfish also exhibited movement type differences between diel periods (having higher proportions of V movements in daytime), suggesting directed foraging at depth. Although short-duration movement to depths by these tagged fish contribute a small percentage of the total time at depth, these depths overlap with the monitored shallow-set pelagic longline gear depths actively targeting swordfish by the vessel in the local fishery. These results suggest that time-at-depth histograms alone may be insufficient to capture feeding motivations at depth and, therefore, true interaction potentials between individual sailfish and pelagic longline gear.

The sheepshead Archosargus probatocephalus is a common estuarine and reef species that is found year round in South Carolina. Although not commercially important, the sheepshead is a significant recreational species, and most of the fishing pressure occurs in state waters. From 1990 to 2005, 5,692 sheepsheads were collected from fishery-dependent and fishery-independent monitoring programs in South Carolina. Fish ranged from 102 to 605 mm in fork length (FL) and were caught during every month of the year. Ages ranged from 0 to 19 years for males and from 0 to 23 years for females; the dominant age-classes were ages 2–5. Marginal increment analysis confirmed the formation of a single annulus per year, and annulus formation began in May. Males and females did not significantly differ in FL at age t(FL_t) or total weight at age t (W_t); the pooled von Bertalanffy growth models were FL_t = 498[1 - e_{-0.297(t 110)}] and W_t = 3,778[1 -e^{-0.165(t - 0.548)}]^2.997. Both males and females exhibited the first signs of sexual maturity at age 1, and 100% maturity was reached at age 4. Batch fecundity estimated late in the spawning season ranged from 18,400 to 738,500 oocytes/spawning event and averaged 235,000 oocytes/spawning event. Fork length, W, and age were positively correlated with fecundity. Although size was a better predictor of fecundity than age, the relationship was weak due to the high variability in size at age. Comparisons of growth parameters for sheepsheads studied in the southeastern United States indicated that South Carolina sheepsheads tend to have a larger maximum FL and a greater maximum age than fish found in the Gulf of Mexico.

Recreational fishing effort for coastal marine species can be significant but is often challenging to estimate. Here we present a case study where a probability-based strip transect survey is used to estimate effort in the Norwegian fishery for European lobster Homarus gammarus. This fishery is conducted by both recreational and commercial fishers, but reliable information on total fishing effort and total catch is lacking. In 2008, we conducted a strip transect sampling survey throughout the lobster fishing season in southern Norway to estimate the number of deployed lobster traps over time. Surface buoys marking lobster traps were counted along strip transects placed representatively in the survey area in five different weeks throughout the lobstering season. Calibration studies were conducted to standardize transect width and to estimate and adjust for detection rates of buoys along transect strips. Mean number of lobster traps per square kilometer and associated variance was estimated by a ratio estimator using bootstrapping, with transects as the primary sampling units. Poststratification of the counts by depth (by 10-m depth intervals) combined with geographical information systems mapping improved the precision of the estimated density of lobster traps and increased the effective sample size of transects by 22–44% per week. Estimated daily effort for the first week was 48.95 (SE = 3.11) traps/km², decreasing steadily to 5.96 (SE = 0.79) in the eighth (and last) week of the lobster season. Our study shows that lobster traps deployed by recreational fishers outnumber the ones deployed by commercial fishers, contributing to 65 % of the total effort (number of traps) in the fishery. We show that strip transects are a suitable way to estimate effort in the Norwegian lobster fishery. We conclude that improved management efforts need to target recreational as well as commercial fishing activities in order to achieve effective management of the red-listed species.

Acoustic telemetry was used to describe fish positions and marine habitat use by tagged bull trout Salvelinus confluentus from the Skagit River, Washington. In March and April 2006, 20 fish were captured and tagged in the lower Skagit River, while 15 fish from the Swinomish Channel were tagged during May and June. Sixteen fish tagged in 2004 and 2005 were also detected during the study. Fish entered Skagit Bay from March to May and returned to the river from May to August. The saltwater residency for the 13 fish detected during the out-migration and return migration ranged from 36 to 133 d (mean ± SD, 75 ± 22 d). Most bull trout were detected less than 14 km (8.5 ± 4.4 km) from the Skagit River, and several bay residents used the Swinomish Channel while migrating. The bull trout detected in the bay were associated with the shoreline (distance from shore, 0.32 ± 0.27 km) and occupied shallow-water habitats (mean water column depth, <4.0 m). The modified-minimum convex polygons (MMCPs) used to describe the habitats used by 14 bay fish showed that most areas were less than 1,000 ha. The mean length of the shoreline bordering the MMCPs was 2.8 km (range, 0.01–5.7 km) for bay fish and 0.6 km for 2 channel residents. Coastal deposits, low banks, and sediment bluffs were common shoreline classes found within the MMCPs of bay fish, while modified shoreline classes usually included concrete bulkheads and riprap. Mixed fines, mixed coarse sediments, and sand were common substrate classes found within MMCPs; green algae and eelgrass (Zostera sp.) vegetation classes made up more than 70% of the area used by bull trout. Our results will help managers identify specific nearshore areas that may require further protection to sustain the unique anadromous life history of bull trout.

We investigated the influence of climatic and environmental factors on interannual variations in juvenile abundances of marine fishes in a river-dominated coastal system of the north-central Gulf of Mexico, where an elevated primary productivity sustains fisheries of high economic importance. Fish were collected monthly with an otter trawl at three stations near Mobile Bay from 1982 to 2007. Fish sizes were used to isolate juvenile stages within the data set, and monthly patterns in juvenile fish abundance and size were then used to identify seasonal peaks for each species. The average numbers of juvenile fish collected during these seasonal peaks in each year were used as indices of annual juvenile abundances and were related to corresponding seasonal averages of selected environmental factors via a combination of principal components analysis and co-inertia analysis. Factors contributing the most to explain interannual variations in juvenile fish abundances were river discharge and water temperature during early spring—early summer, wind speed and North Atlantic Oscillation index during late fall—winter, and atmospheric pressure and wind speed during summer—fall. For example, juvenile abundances of southern kingfish Menticirrhus americanus during summer—fall were positively associated with atmospheric pressure and negatively associated with wind speed during this period. Southern kingfish juvenile abundances during late fall—winter were also negatively associated with wind speed during the same period and were positively associated with river discharge during early spring—early summer. Juvenile abundances of the Atlantic croaker Micropogonias undulatus during early spring—early summer were negatively associated with river discharge and North Atlantic Oscillation during late fall—winter. Overall, the importance of river discharge for many of the species examined emphasizes the major role of watershed processes for marine fisheries production in coastal waters of the north-central Gulf of Mexico.