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Frozen tissues, associated with natural history and biological collections, historically have been archived at temperatures between –20°C and –80°C. More recently, the availability of liquid nitrogen systems has enabled the storage of tissue samples (biobanking) at temperatures as low as –196°C. Currently, it is not known how the degree of coldness (e.g., –80°C or –196°C) or longevity (time in storage) impacts preservation of tissue samples. To examine the effects of long-term storage (–80°C and –196°C) on DNA degradation, tissue samples (muscle and liver) archived for 30, 20, 10, or 1 years were obtained from the Natural Science Research Laboratory at Texas Tech University. The integrity of DNA (measured as molecular weight and fragment length) extracted from samples was determined using automated DNA isolation methods followed by microfluidic distribution measurement. DNA distributions were compared using measures of central tendency, a regression-based molecular mass profile, and as a latent variable in a structural equation model. Muscle samples consistently outperformed liver samples in terms of quality of DNA yield. Also, muscle samples exhibited a significant linear relationship with time in which older samples were more degraded than were recent samples. The signal for a temporal effect on DNA was strongest when considering a latent variable of DNA quality based on mode and kurtosis; 37% of the variation in the latent variable was explained by variation in units of time. More recent time points tended to be more similar, but the temporal effect on the latent variable remained strong even when the oldest samples were removed from the analysis. In contrast, integrity of DNA from liver samples did not have a significant linear relationship with time; however, in some years they exhibited non-normally distributed DNA quality metrics that may have reflected sensitivity of liver tissue to degradation during specimen preparation, DNA extraction, or archive parameters. Results indicated that tissue type and temporal effects influenced rates of DNA degradation, with the latter emphasizing the long-term value of biobanking at the coldest temperatures possible (liquid nitrogen storage) to mitigate degradation of biological samples of ever-increasing scientific value.
We assessed habitat use by the population of Indo-Pacific humpback dolphin, Sousa chinensis, in the waters off Zhanjiang, China, by performing boat-based surveys between 2013 and 2018. In total, we gathered 253 sightings of humpback dolphins. To assess habitat use of humpback dolphins within the study area, we measured two spatial metrics at each sighting site: WDT (tide-calibrated water-depth) and DS (distance to the nearest shore). Results showed that dolphins mainly were observed in shallow (WDT: 8.46 ± 5.13 m, mean ± SD) and inshore (DS: 2.17 ± 2.14 km) waters. Their preference of inhabiting shallow waters was more apparent during the wet season (April–September) than during the dry season (October–March); however, they were encountered in waters much closer to shore during the dry season than the wet season. By weighting survey effort, our sighting density maps further confirmed that humpback dolphins changed their habitat use between wet and dry seasons. Such spatiotemporal variations in dolphin habitat use might be associated with spatiotemporal movements of their prey. Our findings provide insights into variations in fine-scale habitat use of inshore apex predators, and also assist to designate proper conservation measures for these vulnerable animals.
Home range and activity patterns of animals are important elements for wildlife management and conservation practices. We examined seasonal home range and daily activity patterns of the endangered Swayne's hartebeest (Alcelaphus buselaphus swaynei) in Maze National Park, Ethiopia. We tracked two groups of Swayne's hartebeests in open grassland for 1 year. Each group's daily activities (0700–1900 h) and GPS locations were recorded at 15-min intervals on 5 days every month. Activities were grouped into five behavioral categories: feeding, resting, traveling, vigilance, and other. In addition, we carried out nocturnal monitoring during full moon periods to further document movements patterns. We produced 95% and 50% kernel density estimates (KDE) of home range sizes for each group. Home range estimates did not vary across seasons. Feeding and traveling peaked during the early morning and late afternoon, whereas resting occurred most frequently during the midday hours in both seasons. The proportion of time spent feeding was higher during the dry season, whereas a greater proportion of time was spent resting during the wet season. Vigilance behavior occurred consistently throughout the day during both seasons. Time spent feeding and traveling did not vary significantly between seasons. Activity patterns of Swayne's hartebeests are strongly influenced both by time of day and season, while home range size is less influenced by seasonality and may instead reflect temporal variation in food availability. Our findings will help to inform management strategies and conserve one of the last two extant populations of Swayne's hartebeests.
We livetrapped populations of Microtus montanus from 1982 to 2003 in semiarid perennial old-field grasslands of southern British Columbia. We evaluated two, nonmutually exclusive hypotheses (H) to explain their population dynamics: first (H1), that extended breeding during the summer or winter will drive the increase phase of population fluctuations; and second (H2), that density-dependent depression of juvenile survival will be reflected in poor early juvenile survival during high populations. Populations on 2–3 grids of 1 ha were livetrapped at 3- to 8-week intervals in summer and winter except in 5 years of very low populations. Densities ranged from 10/ha to 250/ha. Peak densities occurred in 6 years and an extended low phase occurred from 1999 to 2003. Fluctuations of 3–4 years appeared in our populations but were not always present. Breeding occurred both in summer and winter, and the best predictor of the population growth rate was the fraction of adult females lactating in summer or winter, thereby supporting H1. Juvenile production (number of juveniles/lactating female) varied greatly among years with the mean being over two times higher in low (2.41) than high (1.08) years, thereby supporting H2. There was no clear correlation between population changes and either seasonal temperatures or rainfall, or any combination of these two variables, and no obvious cause of the prolonged low from 1999 to 2003. Thus, both female reproduction and juvenile production drive montane vole dynamics demographically, similar to what is found in other vole species. However, the ultimate cause of these changes remains to be tackled experimentally.
Adult male big brown bats (Eptesicus fuscus) sometimes occur within maternity roosts. We investigated male attendance at big brown bat maternity roosts in a Colorado study area that shows a pattern of sexual segregation by elevation. We tested multiple predictions of three nonmutually exclusive hypotheses to explain male attendance patterns: 1) sex-specific differences in energetic strategies of males and females are maintained at the lower elevation; 2) natal philopatry of inexperienced young males accounts for most attendants; 3) males gain a reproductive advantage for late summer mating at maternity roosts. We tested predictions based on captures of bats at emergence, automated monitoring of annual, seasonal, and daily roost attendance by known-age bats tagged with passive integrated transponders, and anatomical evidence for mating. Findings were most consistent with the first two hypotheses. Adult males accounted for just 3.1% of 8,192 captures of bats at 285 evening emergences from 46 roosts during 2001–2005. Daily attendance rates of males during each active season (0.10 detections/day at age 1 year and 0.20 detections/day at ≥ 2 years old) were lower than in females (0.34 at age 1 year and 0.45 at ≥ 2 years old). Only 92 of 299 males tagged as volant juveniles were detected as adults at five maternity roosts monitored 2002–2005, far fewer than female returns in every age category. We detected known-age adult males almost exclusively at their natal roosts and most males that returned (91 of 92) in years after tagging as juveniles were first detected as 1-year-olds; 20 of 21 individuals that returned at 2–4 years of age were previously detected as 1-year-olds. One-year-old males were re-encountered at annual rates 5–16 times higher than 2- to 4-year-old males, and 1-year-old males and females had lower daily attendance rates than older bats. The male reproductive advantage hypothesis was not well supported. None of 80 females examined in late summer had evidence of insemination, and not all males showed distended scrota. Daily attendance rates of tagged adult males (n = 155) and females (n = 788) were lowest during late summer, suggesting that little reproductive advantage was accrued by males utilizing maternity roosts. Attendance of male big brown bats at maternity roosts at our study area is consistent with the sex-specific energetic strategies and natal philopatry hypotheses, and mating probably occurs at higher elevation autumn roosts and hibernacula.
Bats provide important pollination and seed-dispersal services to native angiosperms. However, many bat species are increasingly threatened by human disturbance, including the Mauritian flying fox (Pteropus niger), an endemic, keystone seed disperser. Native forests are scarce and P. niger frequently feeds in commercial plantations, where it now is considered a pest and subjected to frequent culling, thereby hindering conservation efforts. The invasive long-tailed macaque (Primates: Cercopithecidae, Macaca fascicularis) potentially competes with P. niger for scarce native fruits. We investigated the extent of dietary overlap between M. fascicularis and P. niger on Mauritius by sampling fruit drop for 17 tree species and identifying additional food species along line transects. Fruits of 13 of 17 species were eaten by animals and fruit production across tree replicates generally was low but highly variable. Although M. fascicularis ate only 4% of fruit overall, they consumed 20–100% of the fruits of seven species. Approximately 39% of dropped fruits were intact; based on field observations, most probably were dropped by M. fascicularis. Unlike P. niger, M. fascicularis ate mostly unripe fruit and depleted all fruit of certain species at an unripe stage. Hence, M. fascicularis may restrict P. niger's diet and potentially disrupt seed dispersal of some tree species. Furthermore, small trees are more prone to fruit depletion at an unripe stage by macaques. In addition, asynchronous fruiting phenology across forest fragments may modulate the provision of native fruits to P. niger throughout the year. Although competition can be demonstrated only by controlled experimental studies that are logistically impossible in our scenario, our results highlight potential detrimental consequences that introduced frugivores may have on keystone seed dispersers. Finally, our results suggest that a more integrative and island-wide approach to forest restoration may be valuable for the conservation of P. niger.
KEYWORDS: acoustic structure hypothesis, bioacoustics, distance communication hypothesis, information criterion, mammal, nasal call, oral call, potential for individual identity coding, sender identity, social function hypothesis
Individual distinctiveness in the acoustic structure of vocalizations provides a basis for individual recognition in mammals and plays an important role in social behavior. Within a species, call types can differ in individual distinctiveness, which can be explained by three factors, namely differences in the social function, the distance of the caller to the receiver, and the acoustic structure of the call. We explored the variation in individual distinctiveness across three call types (Grunt, Hiss, Snort) of the southern white rhinoceros (Ceratotherium simum simum) and investigated to what extent the abovementioned factors account for individual distinctiveness. Calls were recorded from 25 adult southern white rhinoceroses in six different zoos. We used three methods to compare the level of individual distinctiveness across call types, namely discriminant function analysis (DFA), potential for individual identity coding (PIC), and the information criterion (Hs). The three call types possessed an acoustic structure capable of showing individual variation to different extents. Individual distinctiveness was lowest for Snorts, intermediate for Hisses, and highest for Grunts. The level of individual distinctiveness of all three call types was lower than that previously reported for Pant calls of this species. Calls functioning to mediate intragroup social interactions had the highest individual distinctiveness. This highlights that a given communicative function and the need for individual discrimination during a social interaction have a major influence on the degree of individual distinctiveness.
Different categories of social calls may be used in a variety of behavioral contexts and may have different functions. Here, we show that Great Himalayan leaf-nosed bats emit two types of calls: bent upward frequency modulated (bUFM) calls emitted during agonistic interactions between two bats that have perched close to each other and stepped upward frequency modulated (sUFM) calls emitted by a roosting individual when a free-flying bat approached. There were significant differences in acoustic parameters between bUFM calls and sUFM calls. Moreover, we tested different choices of Hipposideros armiger to playback of bUFM calls and sUFM calls. The bats avoided the location of bUFM call playbacks independent of the simultaneous playback of echolocation pulses, silence, or sUFM calls. The bats also avoided approaching the side of the flight room where sUFM calls were broadcast when also presented with playbacks of echolocation pulses, but not when simultaneously presented with silence. The results suggest that bUFM calls may serve the function of territorial defense, while sUFM calls may convey warning information. Our results, therefore, imply that the two types of calls have different functions depending on behavioral context. These differences in function suggest that bats can detect context-dependent modifications of acoustic cues across the two types of social calls.
Enrique González-Bernardo, Carlotta Bagnasco, Giulia Bombieri, Alejandra Zarzo-Arias, Héctor Ruiz-Villar, Ana Morales-González, Cindy Lamamy, Andrés Ordiz, David Cañedo, Juan Díaz, Daniel E. Chamberlain, Vincenzo Penteriani
Scent-mediated communication is considered the principal communication channel in many mammal species. Compared with visual and vocal communication, odors persist for a longer time, enabling individuals to interact without being in the same place at the same time. The brown bear (Ursus arctos), like other mammals, carries out chemical communication, for example, by means of scents deposited on marking (or rub) trees. In this study, we assessed rub tree selectivity of the brown bear in the predominantly deciduous forests of the Cantabrian Mountains (NW Spain). We first compared the characteristics of 101 brown bear rub trees with 263 control trees. We then analyzed the potential factors affecting the density of rub trees along 35 survey routes along footpaths. We hypothesized that: (1) bears would select particular trees, or tree species, with characteristics that make them more conspicuous; and (2) that bears would select trees located in areas with the highest presence of conspecifics, depending on the population density or the position of the trees within the species' range. We used linear models and generalized additive models to test these hypotheses. Our results showed that brown bears generally selected more conspicuous trees with a preference for birches (Betula spp.). This choice may facilitate the marking and/ or detection of chemical signals and, therefore, the effectiveness of intraspecific communication. Conversely, the abundance of rub trees along footpaths did not seem to depend on the density of bear observations or their relative position within the population center or its border. Our results suggest that Cantabrian brown bears select trees based on their individual characteristics and their location, with no influence of characteristics of the bear population itself. Our findings can be used to locate target trees that could help in population monitoring.
Studying how animals interact with their environment is fundamental to informing conservation and management efforts, especially when examining large, wide-ranging carnivores in human-dominated landscapes. We hypothesized that the home ranges of bears are configured to exploit supplemental food (corn) and avoid people. In 2004–2016, we tracked 10 brown bears from the Dinaric-Pindos population using GPS telemetry, then used Brownian bridge movement models to estimate their home ranges. We related seasonal home range size to circadian period and density of supplemental feeding sites using generalized linear mixed-effect models. We also used ecological-niche factor analysis to study habitat composition within home range core areas in study areas characterized by different levels of human encroachment. We found that home range size was inversely related to density of supplemental feeding sites, and bears had larger home ranges at night (x̄ = 103.3 ± 72.8 km2) than during the day (x̄ = 62.3 ± 16.6 km2). Our results also revealed that bears living in more human-influenced areas concentrated their use far from human settlements and agricultural lands but stayed close to supplemental feeding sites. Our data suggest that bears alter their space-use patterns at the home range level in response to anthropogenic land use and food availability.
Despite increasing habitat fragmentation, large carnivore populations in parts of Europe have been recovering and expanding into human-dominated areas. Knowledge of animal dispersal patterns in such areas is important for their conservation, management, and coexistence with humans. We used genetic data based on 15 microsatellite markers from 312 individuals (98 females, 214 males) to assess kinship and dispersal patterns during the recovery and spatial expansion of a wild brown bear (Ursus arctos) population (2003–2010) in the human-dominated landscape of Greece. We hypothesized that bear dispersal in Greece was sex-biased, with females being more philopatric and males dispersing more frequently and over greater distances. Dispersal indeed was sex-biased, with males dispersing more frequently and farther than females. Overall, females were found to be philopatric; males also appeared to be philopatric, but to a lesser degree. However, a high proportion of females displayed dispersal behavior, which may be indicative of a pre-saturation stage of the population in that part of the country. Our results indicate that dispersal may be due to evading competition and avoiding inbreeding. We also documented long-distance dispersal of bears, which is considered to be indicative of a spatially expanding population. Our results highlight the value of using noninvasive genetic monitoring data to assess kinship among individuals and study dispersal patterns in human-dominated landscapes. Brown bears remain threatened in Greece; we therefore recommend systematic genetic monitoring of the species in combination with careful habitat management to protect suitable habitat (i.e., dispersal corridors) and ultimately ensure co-existence with humans and survival of brown bears in the country.
In most polygynous species, males compete for access to females using agonistic interactions to establish dominance hierarchies. Typically, larger and stronger males become more dominant and thus gain higher mating and reproductive success over subordinate males. However, there is an inherent trade-off between time and energy invested in dominance interactions versus courtship and mating activities. Individuals may overcome this tradeoff by selectively engaging in more effective mating tactics. North American bison (Bison bison) are a species of conservation concern that exhibit female-defense polygyny with two predominant mating tactics: (1) tending individual females; or (2) challenging tending males as a satellite and then mating opportunistically. Here, we use social network analysis to examine the relationship between position in the agonistic interaction network of bison males and their mating, reproductive success, and reproductive tactics and effort. To assess the potential for social network analysis to generate new insights, we compare male (node) centrality in the interaction network with traditional David's score and Elo-rating dominance rankings. Local and global node centrality and dominance rankings were positively associated with prime-aged, heavy males with the most mating success and offspring sired. These males invested more effort in the “tending” tactic versus the “satellite” tactic, and they tended more females for longer periods during peak rut, when most females were receptive. By engaging in the most effective mating tactic, dominant males may mitigate the trade-off between allocating time and energy to agonistic interactions that establish dominance, versus courtship and mating. While less dominant males participated more in the alternative mating tactic, network analysis demonstrated that they were still important to the interaction network on both a local and global scale.
Keystone predators can impact many prey species, including those that are endangered. A requisite to assess the impact predators have on different prey populations is to identify the species being consumed in different types of communities, while accounting for possible seasonal variation in consumption. Here we used analysis of North American river otter (Lontra canadensis) scat to assess the impact river otters have on their prey populations, particularly endangered salmonids and migrating birds. We analyzed the prey composition of 1,411 river otter scats collected from 10 sites in Humboldt County, California, between 2011 and 2012. Analysis of prey items in scat placed study sites into four distinct clusters based on diet. Fish, mostly from the families Gasterosteidae, Cottidae, and Pholidae, formed the primary prey component, and crustaceans, birds, amphibians, and insects, also were important components of river otter diet. Salmonids constituted < 5% of overall diet, but river otters consumed the largest percentage of salmon during salmon spawning season at the inland cluster where salmonids spawn. Scat marking intensity varied between clusters and seasons, with the most scats collected in the autumn and the fewest in the winter/spring, except at the inland cluster where the pattern of marking activity was reversed. River otters may be responding to seasonal migrations of endangered and threatened salmonids. Diet surveys of this type are useful for monitoring resource use by top predators in aquatic ecosystems.
The wolverine (Gulo gulo) is a Holarctic species found in North America primarily across the boreal forest, the subarctic, and along the Pacific coast, including Vancouver Island (VI), British Columbia. While wolverines on VI are rare and possibly extirpated, they have been previously described as a unique subspecies, G. g. vancouverensis, distinct from G. g. luscus from the mainland of North America. However, the validity of the VI subspecies is contentious, with conflicting results from studies of skull morphology. Here, we used molecular analyses to characterize the genetic diversity of the VI population and resolve this taxonomic debate to assist with conservation priorities. Historical DNA of VI wolverines was obtained from museum specimens, amplified at 16 nuclear microsatellite loci, and sequenced at the mitochondrial D-loop control region to compare with wolverines from mainland British Columbia. The VI population had lower allelic richness and was fixed for a single common mtDNA haplotype. Bayesian and non-Bayesian assignments using microsatellites generally revealed admixture across populations, implying allele frequencies between the VI and mainland populations were not significantly different. Hence, both types of genetic markers showed little evolutionary divergence between VI and the mainland population. Combined, these results do not provide evidence of significant genetic distinction for VI wolverines, nor support the subspecific classification. Immediate conservation efforts should focus on estimating population size, while future conservation planning can assume VI wolverines likely are not a unique genetic population and there remains the potential for natural recolonization of wolverines to VI.
Mauldin et al. (2014) examined 103 woodrats collected in 1988 from a putative contact zone located in Major County, Oklahoma, and provided evidence for a substantial level of hybridization between Neotoma floridana and N. micropus. This site was resampled in 2010, with 42 woodrats collected, and again in 2011, when an additional 88 woodrats were collected from 11 localities along a transect extending northwest to southeast of the center of the hybrid zone. These specimens were examined to: 1) serve as independent data sets, separated by 22 years, for a temporal comparison of hybrid zone characteristics and 2) determine the geographic extent of genetic introgression between the two species. All individuals were genotyped at 11 genetic markers (eight microsatellite loci, one mitochondrial gene—Cytochrome b, and two nuclear introns—intron 2 of the vertebrate alcohol dehydrogenase gene and intron 7 of the beta-fibrinogen gene) that were shown to be informative in the original study. Levels of allelic introgression were assessed at 12 localities (11 new localities, as well as the previously sampled putative contact zone) to determine size and continuity of the hybrid zone. Expanded geographic sampling revealed evidence of genetic introgression at 11 of 12 localities, although only two localities were determined to be active areas of hybridization in 2011. The temporal comparison revealed that characteristics of the hybrid zone (i.e., frequency of hybridization, directionality, location of the zone, and ratios of hybrid classes) remained similar between sampling events. These findings suggest hybridization between these species is ongoing but is intermittent and potentially ephemeral in this region.
Carrion represents an important resource for carnivores. Examining competition for carrion in a risk–reward framework allows for a better understanding of how predator guilds compete for and benefit from carrion. We used trail camera data to compare wintertime carrion use and vigilance behavior of four carnivores in Denali National Park and Preserve. We found that carrion use was dominated by wolves (Canis lupus) and wolverines (Gulo gulo), followed by red foxes (Vulpes vulpes) and coyotes (Canis latrans). Wolves and wolverines were twice as likely to visit a carcass as foxes and coyotes, and their visits were longer and more numerous. Our results suggest scavenging animals reduced their risk exposure primarily by reducing their use of carrion, with some evidence of increased vigilance at busy sites. We found that carrion use and behavior at carcass sites were influenced by the mortality type of the carcass, the age of the carcass, and the long-term intensity of wolf use in the area. Our results also suggest that wolves are the “top scavenger,” and indicate that intraguild competition for carrion strongly affects which species benefit from carrion, with larger and more aggressive species dominating.
Hibernation is an adaptation to survive periods of stress, from food limitation or harsh thermal conditions. A key question in contemporary ecology is whether rare, range-restricted species can change their behavior in response to climate change (i.e., through behavioral plasticity). The northern Idaho ground squirrel, Urocitellus brunneus (A. H. Howell, 1928), is a federally threatened species that hibernates for approximately 8 months per year within the bounds of its small range in central Idaho, USA. Changes in temperature, snow accumulation, and summer precipitation, all brought about as a result of climate change, may reduce survival or fecundity of northern Idaho ground squirrels if they cannot adapt to these climate changes. Hibernating species can respond to climate-change-induced thermal challenges in two ways: change their hibernation physiology and behavior (i.e., emergence date or number of torpor bouts) or alter their environment (i.e., change hibernacula depth or location). We explored a suite of intrinsic and extrinsic factors to document the extent to which they influenced hibernation behavior of northern Idaho ground squirrels. Emergence date was positively associated with snowpack and negatively associated with mean winter temperature. Mean minimum skin temperature was negatively associated with canopy closure and slope of a squirrel's hibernaculum. Duration of the heterothermal period, number of euthermic bouts, and total time spent euthermic were positively associated with body mass. Immergence date and duration of the longest torpor bout were negatively associated with body mass. Warmer temperatures and less snow accumulation in the winter—caused by climate change—likely will cause altered emergence dates. Our results suggest that any future climate-induced changes in snowfall, ambient temperature, food availability, or habitat likely will impact survival of this rare ground squirrel, because such changes will cause changes in hibernation behavior, percent mass loss during hibernation, and duration of the active season when small mammals are more susceptible to predation.
Dasyurids are small mammals that can conserve energy and water by using shelters that insulate against extreme conditions, prevent predation, and facilitate torpor. To quantify the diurnal sheltering requirements of a poorly known, endangered dasyurid, the sandhill dunnart, Sminthopsis psammophila, we radiotracked 40 individuals in the Western Australian Great Victoria Desert between 2015 and 2019. We assessed the effect of habitat class (broad habitat features), plot-level (the area surrounding each shelter), and shelter characteristics (e.g., daily temperature ranges), on shelter selection and sheltering habitat preferences. Two hundred and eleven diurnal shelters (mean of 5 ± 3 shelters per individual) were located on 363 shelter days (the number of days each shelter was used), within mature vegetation (mean seral age of 32 ± 12 years postfire). Burrows were used on 77% of shelter days and were typically concealed under mature spinifex, Triodia spp., with stable temperature ranges and northern aspects facing the sun. While many burrows were reused (n = 40 across 175 shelter days), spinifex hummock shelters typically were used for one shelter day and were not insulative against extreme temperatures. However, shallow scrapes within Lepidobolus deserti hummock shelters had thermal advantages and log shelters retained heat and were selected on cooler days. Sminthopsis psammophila requires long-unburned sheltering habitat with mature vegetation. Summer fires in the Great Victoria Desert can be extensive and destroy large areas of land, rendering them a key threat to the species. We conclude that the survey and conservation of S. psammophila requires attention to long-unburned, dense lower stratum swale, sand plain, and dune slope habitats, and the tendency of S. psammophila to burrow allows the species to survive within the extreme conditions of its desert environment.
Evolutionary constraints and ecological pressures influence species' morphological diversity. The aim of this study was to explore patterns of morphological variation, to investigate the influence of environmental variables on morphological differentiation, and assess the strength of phylogenetic signal for the cranium and mandible in spiny rats of the genus Trinomys. We examined 377 crania and mandibles of all species of the genus Trinomys. We used geometric morphometric methods based on two-dimensional anatomical landmarks to describe cranium and mandible shape and size. Phylogenetic signal was tested using the K statistics and associations between morphology and environmental variables were made using a phylogenetic partial least squares analysis. We found marked differences in size and shape in the synchranium among species, especially in the segregation of T. albispinus and T. yonenagae from the other species, which in turn greatly overlapped both in size and shape spaces. We found a weak phylogenetic signal for size of the synchranium and intermediate phylogenetic signals for shape, a pattern similar to other studies. Differentiation of the synchranium shape in Trinomys was associated largely with precipitation-related variables, while the association between size and environmental variables was weak. Notably, Trinomys species inhabiting xeric environments had relatively larger tympanic bullae.
A new species of the cricetid rodent genus Thomasomys is described from the montane forests of the Cordilleras del Cóndor and Kutukú, southeastern Ecuador, at elevations between 1,770 and 2,215 m. The species has a large body size (head and body length 137–147 mm) in comparison with other species in the genus, and also is distinguished from its congeners by presenting a tail longer than the head–body length, presence of genal vibrissae 1 and 2, wide presphenoid, first and second lower molars with ectolophid, and third lower molar slightly shorter than the second. A molecular phylogeny based on mitochondrial genes resolved the new species a member of the “aureus” group, most closely related to Thomasomys aureus sensu stricto (genetic distance 8.57%) and as well as an additional undescribed species from southeastern Ecuador. This finding increases the diversity of Thomasomys to 46 species, of which 17 species are present in Ecuador. In addition, the species described herein is the first Thomasomys from the Amazonian basin, a genus that up to now was thought to be restricted to Andean ranges.
Jan F. Kamler, Christin Minge, Susana Rostro-García, Tazarve Gharajehdaghipour, Rachel Crouthers, Visattha In, Chen Pay, Chanratana Pin, Prum Sovanna, David W. Macdonald
We used radiocollars and GPS collars to determine the movements and habitat selection of golden jackals (Canis aureus) in a seasonally dry deciduous forest with no human settlements in eastern Cambodia. We also collected and analyzed 147 scats from jackals to determine their seasonal diet and prey selection. The mean (± SE) annual size of home-range ranges (47.1 ± 2.5 km2; n = 4), which were mutually exclusive between mated pairs, was considerably larger than that previously reported for this species, resulting in an extremely low density (0.01 jackal/km2). The unusually large home ranges and low density probably were due to the harsh dry season when most understory vegetation is burned and nearly all waterholes dry up, thereby causing a large seasonal decline in the availability of small vertebrate prey. Resident groups consisted of an alpha pair, but no betas, and were situated only in areas not occupied by leopards (Panthera pardus) and dholes (Cuon alpinus). Jackals avoided dense forests and streams, and had a strong selection for dirt roads, possibly to avoid larger predators. Overall the jackal diet was diverse, with at least 16 prey items identified, and there was no significant difference in diet composition between the cool-dry and hot-dry seasons. Scat analysis showed that the main food items consumed by jackals were processional termites (Hospitalitermes spp.; 26% biomass consumed), followed by wild pig (Sus scrofa; 20%), muntjac (Muntiacus vaginalis; 20%), and civets (17%). Compared to available biomass, jackals were not random in their consumption of ungulates because muntjac were selectively consumed over larger ungulate species. Dietary overlap with dholes and leopards was relatively low, and consumption patterns indicated jackals were preying on ungulates rather than scavenging from kills of larger carnivores. Our results showed that the jackal is an extremely adaptable and opportunistic species that exhibits unique behaviors to survive in an extreme environment near the edge of its distribution.
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