BioOne.org will be down briefly for maintenance on 17 December 2024 between 18:00-22:00 Pacific Time US. We apologize for any inconvenience.
How to translate text using browser tools
31 May 2018 Genomic data reveals large similarities among Canadian and French maternal pig lines
Raphael Boré, Luiz F. Brito, Mohsen Jafarikia, Alban Bouquet, Laurence Maignel, Brian Sullivan, Flávio S. Schenkel
Author Affiliations +
Abstract

Combining reference populations from different countries and breeds could be an affordable way to enlarge the size of the reference populations for genomic prediction of breeding values. Therefore, the main objectives of this study were to assess the genetic diversity within and between two Canadian and French pig breeds (Landrace and Yorkshire) and the genomic relatedness among populations to evaluate the feasibility of an across-country reference population for pig genomic selection. A total of 14 756 pigs were genotyped on two single nucleotide polymorphism (SNP) chip panels (∼65K SNPs). A principal component analysis clearly discriminated Landrace and Yorkshire breeds, and also, but to a lesser extent, the Canadian and French purebred pigs of each breed. Linkage disequilibrium (LD) between adjacent SNPs was similar within Yorkshire populations. However, levels of LD were slightly different for Landrace populations. The consistency of gametic phase was very high between Yorkshire populations (0.96 at 0.05 Mb) and high for Landrace (0.88 at 0.05 Mb). Based on consistency of gametic phase, Canadian and French pig maternal lines are genetically close to each other. These results are promising, as they indicate that the accuracy of estimated genomic breeding values may increase by combining reference populations from the two countries.

Copyright remains with the author(s) or their institution(s). Permission for reuse (free in most cases) can be obtained from RightsLink.
Raphael Boré, Luiz F. Brito, Mohsen Jafarikia, Alban Bouquet, Laurence Maignel, Brian Sullivan, and Flávio S. Schenkel "Genomic data reveals large similarities among Canadian and French maternal pig lines," Canadian Journal of Animal Science 98(4), 809-817, (31 May 2018). https://doi.org/10.1139/cjas-2017-0103
Received: 19 July 2017; Accepted: 25 February 2018; Published: 31 May 2018
JOURNAL ARTICLE
9 PAGES

This article is only available to subscribers.
It is not available for individual sale.
+ SAVE TO MY LIBRARY

KEYWORDS
genetic diversity
genomic selection
LINKAGE DISEQUILIBRIUM
persistence of gametic phase
pig
RIGHTS & PERMISSIONS
Get copyright permission
Back to Top